The role of high power electron cyclotron (EC) waves in controlling magnetohydrodynamic (MHD) instabilities in tokamaks has been assessed in several experiments, exploiting the physical effects induced by resonant heating and current drive. Recently a new EC launcher, whose main goal is controlling tearing modes and possibly preventing their onset, is being implemented on FTU. So far most of the components of the launcher control strategy have been realized and successfully tested on plasma experiments. Nevertheless the operations of the new launcher must be completely integrated into the existing one, and to FTU control system. This work deals with this final step, proposing a hardware and software architecture implementing up to date technologies, to achieve a modular and effective control strategy well integrated into a legacy system. The slow control system of the new EC launcher is based on a Siemens S7 Programmable Logic Controller (PLC), integrated into FTU control system supervisor through an EPICS1 input output controller (IOC) and an in-house developed Channel Access client application creating an abstraction layer that decouples the IOC and the PLC from the FTU Supervisor software. This architecture could enable a smooth migration to an EPICS-only supervisory control system. The real time component of the control system is based on the open source MARTe2 framework relying on a Linux real time cluster, devoted to the detection of MHD instabilities and the calculation of the injection angles and the time reference for the radiofrequency power enable commands for the EC launcher. © 2013 Euratom-ENEA Association sulla Fusione.